Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4364173_4366550_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4364173 - 4366550

Intron Length:

2378

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAGGATCT

5'SS Class:

weak_major

3'SS Sequence:

GACACACGCCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGGAGAT

U12 Branch Point Sequence:

CCCACCAGAAGA

Flanking Amino Acid:

ELEGKAGFGSGGPYLCARCG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.2

0.26

1.2

59.4

40.4

Major BPS

49.5

-0

1.3

46.4

Major PPT

45.8

-0.2

1.1

34.1

34.7

Minor 5ss

42.1

-0.9

3.4

66.8

Minor BPS

41.2

-0.6

1.9

45.44

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027330

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044952

4364068 - 4370093

6026