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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43668440_43669671_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43668440 - 43669671
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
GTTTCATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTTTCTGCATT
Flanking Amino Acid:
AAPCGTARLPDFKLDFGHHQ
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
57.1
42.2
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
83.7
0.76
0.8
77.6
35.6
Minor 5ss
26.6
-2.7
3.2
32.4
42.3
Minor BPS
60.4
0.41
1.9
84.15
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003472
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003533
43668344 - 43672657
4314