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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43669818_43670558_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43669818 - 43670558
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAGGTGAC
5'SS Class:
major
3'SS Sequence:
ATGTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
CAATTATTGACC
Flanking Amino Acid:
MNTSNLSSLDKQEGVADGIY
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
69.5
35.6
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
80
0.67
0.9
73.7
36.2
Minor 5ss
33.3
-1.9
3.5
42.7
39.1
Minor BPS
52.6
0.06
1.6
59.98
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003472
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003533
43668344 - 43672657
4314