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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43675668_43676765_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
43675668 - 43676765
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
TTCTTTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TAAACCTTTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
73.2
37.4
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
89.6
0.89
0.6
83.8
31.2
Minor 5ss
36.7
-1.5
2.9
47
42.5
Minor BPS
61.1
0.43
1.7
75.01
41.6

Associated Gene:

Gene:
NOD1
Ensembl Gene ID:
ENSAPLG00000003385
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003460
43675567 - 43694259
18693