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Intron Name: Anas_platyrhynchos_platyrhynchos_2_43676611_43676765_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

43676611 - 43676765

Intron Length:

155

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGCACT

5'SS Class:

major

3'SS Sequence:

TTCTTTTTCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTTAT

U12 Branch Point Sequence:

TAAACCTTTATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

71.4

40.3

Major BPS

71.5

0.54

1.1

63.3

42.8

Major PPT

89.6

0.89

0.6

83.8

31.2

Minor 5ss

36.1

-1.6

2.9

41.9

44.5

Minor BPS

61.1

0.43

1.7

75.01

41.6

Associated Gene:

Gene:

NOD1

Ensembl Gene ID:

ENSAPLG00000003385

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043580

43676239 - 43694657

18419