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Intron Name: Anas_platyrhynchos_platyrhynchos_2_43676862_43679150_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

43676862 - 43679150

Intron Length:

2289

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCACTG

5'SS Class:

major

3'SS Sequence:

TTTACTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTTACTTTTACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.1

0.43

1.2

45.6

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

89.2

0.88

0.7

83.8

Minor 5ss

47.2

-0.3

2.9

65.1

46.1

Minor BPS

68.6

0.58

1.6

80.14

35.3

Associated Gene:

Gene:

NOD1

Ensembl Gene ID:

ENSAPLG00000003385

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003460

43675567 - 43694259

18693

ENSAPLT00000043580

43676239 - 43694657

18419

ENSAPLT00000033662

43676760 - 43694657

17898