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Intron Name: Anas_platyrhynchos_platyrhynchos_2_43679490_43681221_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43679490 - 43681221

Intron Length:

1732

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTGTTT

5'SS Class:

major

3'SS Sequence:

GTTGTTTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATGCAT

U12 Branch Point Sequence:

TATGCATCAATG

Flanking Amino Acid:

VVQFPTQADKVRKILDLVQS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

74.1

36.8

Major BPS

67.2

0.43

1.4

77.7

37.1

Major PPT

0.76

0.8

81.3

36.4

Minor 5ss

48.8

-0.1

3.1

73.2

43.6

Minor BPS

48.6

-0.2

58.18

43.4

Associated Gene:

Gene:

NOD1

Ensembl Gene ID:

ENSAPLG00000003385

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043580

43676239 - 43694657

18419

ENSAPLT00000033662

43676760 - 43694657

17898

ENSAPLT00000003460

43675567 - 43694259

18693