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Intron Name: Anas_platyrhynchos_platyrhynchos_2_43681397_43682050_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43681397 - 43682050

Intron Length:

654

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCCG

5'SS Class:

strong_major

3'SS Sequence:

CCTGTCTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTAATAACA

Flanking Amino Acid:

CSRPVVNTDPVSRYCQKLRY

Intron Amino Acid Position:

131

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

44.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

83.1

0.74

0.8

80.1

31.9

Minor 5ss

31.1

-2.2

3.2

39.3

46.1

Minor BPS

63.5

0.42

1.9

81.45

33.1

Associated Gene:

Gene:

NOD1

Ensembl Gene ID:

ENSAPLG00000003385

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043580

43676239 - 43694657

18419

ENSAPLT00000033662

43676760 - 43694657

17898

ENSAPLT00000003460

43675567 - 43694259

18693