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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43683855_43685340_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43683855 - 43685340
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGATTCAAACT
Flanking Amino Acid:
LPCFSKLAVIRLSVNQITDH
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
74.2
0.54
0.8
65.4
34.7
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
46.9
-0.1
2
68.42
42.8

Associated Gene:

Gene:
NOD1
Ensembl Gene ID:
ENSAPLG00000003385
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043580
43676239 - 43694657
18419
ENSAPLT00000033662
43676760 - 43694657
17898
ENSAPLT00000003460
43675567 - 43694259
18693