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Intron Name: Anas_platyrhynchos_platyrhynchos_2_43686178_43688997_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43686178 - 43688997

Intron Length:

2820

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

CTGTCTTCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTAATAT

U12 Branch Point Sequence:

CTGTCTTCACCA

Flanking Amino Acid:

IEECSSLEYVKMWGNHVGDE

Intron Amino Acid Position:

788

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

72.5

39.9

Major BPS

55.2

0.13

1.2

41.2

Major PPT

73.2

0.52

0.9

66.6

39.4

Minor 5ss

41.3

-1

2.8

49.6

Minor BPS

50.1

1.9

62.79

Associated Gene:

Gene:

NOD1

Ensembl Gene ID:

ENSAPLG00000003385

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033662

43676760 - 43694657

17898