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Intron Name: Anas_platyrhynchos_platyrhynchos_2_43687706_43688997_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43687706 - 43688997

Intron Length:

1292

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

CTGTCTTCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTAATAT

U12 Branch Point Sequence:

CTGTCTTCACCA

Flanking Amino Acid:

IQKSKTMFEIGMWGNHVGDE

Intron Amino Acid Position:

816

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

77.7

33.5

Major BPS

55.2

0.13

1.2

41.2

Major PPT

73.2

0.52

0.9

66.6

39.4

Minor 5ss

-1.1

2.7

42.4

44.3

Minor BPS

50.1

1.9

62.79

Associated Gene:

Gene:

NOD1

Ensembl Gene ID:

ENSAPLG00000003385

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043580

43676239 - 43694657

18419

ENSAPLT00000003460

43675567 - 43694259

18693