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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43689082_43690236_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43689082 - 43690236
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACCC
5'SS Class:
major
3'SS Sequence:
GTTTGCTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTTTGCTTCACA
Flanking Amino Acid:
LRNHPTLTNVSLAFNGITSE
Intron Amino Acid Position:
844

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
65.8
38.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78.8
0.65
0.9
72.3
37.9
Minor 5ss
32.6
-2
3.1
43.3
43.8
Minor BPS
59.5
0.29
2.2
75.93
41.5

Associated Gene:

Gene:
NOD1
Ensembl Gene ID:
ENSAPLG00000003385
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043580
43676239 - 43694657
18419
ENSAPLT00000033662
43676760 - 43694657
17898
ENSAPLT00000003460
43675567 - 43694259
18693