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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43690321_43691099_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43690321 - 43691099
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTCTCTCCCACT
Flanking Amino Acid:
MQHNDSVKIFWLTKNELDDE
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.1
36.5
Major BPS
61.3
0.28
1
62
30.6
Major PPT
67.8
0.4
0.8
66.2
28.8
Minor 5ss
39.8
-1.1
2.9
48.9
41.6
Minor BPS
46.7
-0.1
2.2
72.5
44.6

Associated Gene:

Gene:
NOD1
Ensembl Gene ID:
ENSAPLG00000003385
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043580
43676239 - 43694657
18419
ENSAPLT00000033662
43676760 - 43694657
17898
ENSAPLT00000003460
43675567 - 43694259
18693