About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43691184_43692775_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43691184 - 43692775
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTGACATGAAGC
Flanking Amino Acid:
LKVNKKLVHLWLIQNQITAR
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
82.8
0.74
0.7
81
31
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
47.1
-0.2
2
61.44
43.3

Associated Gene:

Gene:
NOD1
Ensembl Gene ID:
ENSAPLG00000003385
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043580
43676239 - 43694657
18419
ENSAPLT00000033662
43676760 - 43694657
17898
ENSAPLT00000003460
43675567 - 43694259
18693