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Intron Name: Anas_platyrhynchos_platyrhynchos_2_43692860_43694186_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43692860 - 43694186

Intron Length:

1327

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAAGTTC

5'SS Class:

major

3'SS Sequence:

CCCTCTTCAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

CCCTCTTCAACA

Flanking Amino Acid:

LKENTAIKEVCLNGNLISQE

Intron Amino Acid Position:

928

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

36.5

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

72.9

0.52

0.9

68.6

30.4

Minor 5ss

40.8

-1

3.4

55.1

44.8

Minor BPS

58.5

0.26

1.6

62.68

44.2

Associated Gene:

Gene:

NOD1

Ensembl Gene ID:

ENSAPLG00000003385

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033662

43676760 - 43694657

17898

ENSAPLT00000003460

43675567 - 43694259

18693

ENSAPLT00000043580

43676239 - 43694657

18419