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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43703337_43704533_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
43703337 - 43704533
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GCTTTTTCAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
77.5
0.62
0.9
73.4
35.9
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
60.7
0.33
1.5
67.57
39.2

Associated Gene:

Gene:
ZNRF2
Ensembl Gene ID:
ENSAPLG00000020462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039180
43702721 - 43754053
51333