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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43704612_43706075_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43704612 - 43706075
Intron Length:
1464

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGCATCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCACGTCAATT
Flanking Amino Acid:
RLPCLCIYHKGCIDEWFEVN
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
1.1
91.4
26.9
Major BPS
100
1.24
0.5
100
0
Major PPT
68.3
0.41
1
62.9
38.2
Minor 5ss
30.9
-2.2
3.9
43.1
43.9
Minor BPS
49
0.01
2.3
72.72
44.5

Associated Gene:

Gene:
ZNRF2
Ensembl Gene ID:
ENSAPLG00000020462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039180
43702721 - 43754053
51333