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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4370476_4370520_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4370476 - 4370520
Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATCACC
5'SS Class:
major
3'SS Sequence:
TTTCTTAGACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CTTTCTTAGACT
Flanking Amino Acid:
IHIQPFTGEKHSAVKDFTSK
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
65.4
38.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
68.5
0.42
1
64
41.5
Minor 5ss
42.4
-0.8
2.8
54
36.9
Minor BPS
65.7
0.58
1.7
82.48
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027330
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025627
4363293 - 4370601
7309