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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43706182_43724762_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43706182 - 43724762
Intron Length:
18581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ACCTTTTTAACT
Flanking Amino Acid:
CLTKPRITYNEDVLSKDTGE
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.4
37.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.1
0.75
0.8
80.6
31.5
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
71.3
0.75
1.2
77.06
40.2

Associated Gene:

Gene:
ZNRF2
Ensembl Gene ID:
ENSAPLG00000020462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039180
43702721 - 43754053
51333