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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43724859_43753542_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43724859 - 43753542
Intron Length:
28684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TTGTTTTTCATA
Flanking Amino Acid:
PAHLSPHLFGGFKCPVCSKF
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
83.2
0.75
0.7
80.1
32
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
57.7
0.24
1.7
69.78
37.7

Associated Gene:

Gene:
ZNRF2
Ensembl Gene ID:
ENSAPLG00000020462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039180
43702721 - 43754053
51333