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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43826491_43828538_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43826491 - 43828538
Intron Length:
2048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTGTTTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TGTTTTCCAAAG
Flanking Amino Acid:
QGSNQLMNTLRNDLQLSESG
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
74.5
37.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
72.8
0.51
1
74.8
33.9
Minor 5ss
36.9
-1.5
2.7
46.9
41.8
Minor BPS
44.9
-0.5
1.9
54.13
40.7

Associated Gene:

Gene:
EAF1
Ensembl Gene ID:
ENSAPLG00000030137
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038510
43824356 - 43846329
21974