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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43828770_43835605_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43828770 - 43835605
Intron Length:
6836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATGGTTTCAACC
Flanking Amino Acid:
PEPQLDDIKRELRAEVEIIE
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
89.8
0.89
0.6
88
22
Minor 5ss
31
-2.2
3.2
38.7
46.6
Minor BPS
50.5
-0
1.6
59.95
39.8

Associated Gene:

Gene:
EAF1
Ensembl Gene ID:
ENSAPLG00000030137
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038510
43824356 - 43846329
21974