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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43842830_43845722_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43842830 - 43845722
Intron Length:
2893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TTTTCCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
TCACCATTATTT
Flanking Amino Acid:
RPKASFHTIRYDFKPASIDT
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.1
53.5
38
Major BPS
70.5
0.51
1
72
33.1
Major PPT
86.8
0.83
0.6
85.9
21
Minor 5ss
35.1
-1.7
3.4
52.1
44.7
Minor BPS
49.4
0.03
1.9
67.57
43.1

Associated Gene:

Gene:
EAF1
Ensembl Gene ID:
ENSAPLG00000030137
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038510
43824356 - 43846329
21974