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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43846934_43847372_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
43846934 - 43847372
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
77.7
0.62
0.8
69.5
36.8
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
METTL6
Ensembl Gene ID:
ENSAPLG00000003082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003142
43846760 - 43855527
8768