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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43849750_43851321_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43849750 - 43851321
Intron Length:
1572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTACATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATTACATGACA
Flanking Amino Acid:
MHLVLKNIYKVLKPGKCVLF
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
68.1
0.41
1.1
62.7
42.5
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
58.7
0.27
1.8
73.92
36.9

Associated Gene:

Gene:
METTL6
Ensembl Gene ID:
ENSAPLG00000003082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003142
43846760 - 43855527
8768