About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43851464_43853768_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43851464 - 43853768
Intron Length:
2305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GGGTTTTTAATC
Flanking Amino Acid:
DGTRAYFFTEEFLSQLFKSE
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.8
0.83
0.7
85.5
29.2
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
63.2
0.39
1.2
62.92
37.1

Associated Gene:

Gene:
METTL6
Ensembl Gene ID:
ENSAPLG00000003082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003142
43846760 - 43855527
8768