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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4387113_4388196_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4387113 - 4388196
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTTT
5'SS Class:
major
3'SS Sequence:
ATTTTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTATTTATTT
Flanking Amino Acid:
RIREGDEQRTFFSFPAVVAP
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
75.2
37.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.5
0.82
0.7
85.4
28.5
Minor 5ss
44.8
-0.6
3.1
65.3
45.9
Minor BPS
58.1
0.33
1.8
76.23
41.2

Associated Gene:

Gene:
GARS1
Ensembl Gene ID:
ENSAPLG00000015638
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016326
4384451 - 4403712
19262