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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43881622_43890126_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
43881622 - 43890126
Intron Length:
8505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CAACGTTTCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTGCAA
U12 Branch Point Sequence:
TGCTCTGCAACG
Flanking Amino Acid:
DINRRETELEDARQKFRSVL
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
53.2
0.08
1.4
65.6
41.4
Major PPT
56
0.14
1.1
54.8
38.9
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
46.6
-0.4
2.2
55.88
45.6

Associated Gene:

Gene:
SH3BP5
Ensembl Gene ID:
ENSAPLG00000002814
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002861
43879392 - 43953896
74505