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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43890256_43907463_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43890256 - 43907463
Intron Length:
17208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTGTCTGTAATC
Flanking Amino Acid:
YWEARRVARQAQLEAQRATQ
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
76
0.59
0.7
69.3
31.3
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
60.9
0.32
2
73.46
38.5

Associated Gene:

Gene:
SH3BP5
Ensembl Gene ID:
ENSAPLG00000002814
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002861
43879392 - 43953896
74505