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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4390322_4392098_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4390322 - 4392098
Intron Length:
1777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAGCCTTTAAAT
Flanking Amino Acid:
TEREQLLNDKGEFTVETEGK
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.7
45
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
37.4
-1.4
3
38.2
46.7
Minor BPS
65.9
0.58
1.4
76.11
40.1

Associated Gene:

Gene:
GARS1
Ensembl Gene ID:
ENSAPLG00000015638
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016326
4384451 - 4403712
19262