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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43917083_43917585_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43917083 - 43917585
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
CGTCTAATACCT
Flanking Amino Acid:
LKAKYYVQLEQLKKTVDDLQ
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.2
34.9
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
76.2
0.59
0.9
77.2
31.5
Minor 5ss
31.9
-2.1
3.3
41.7
44.9
Minor BPS
42.1
-0.5
2
59.98
43

Associated Gene:

Gene:
SH3BP5
Ensembl Gene ID:
ENSAPLG00000002814
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002861
43879392 - 43953896
74505