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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43917806_43919800_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43917806 - 43919800
Intron Length:
1995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
GTTTCCTTCACT
Flanking Amino Acid:
ASKLESDSVSMASEVFEDDN
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.5
28.2
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
78.4
0.64
0.9
72.5
37.5
Minor 5ss
32.3
-2
2.6
35.1
34.3
Minor BPS
78.7
0.99
1.7
92.9
35.6

Associated Gene:

Gene:
SH3BP5
Ensembl Gene ID:
ENSAPLG00000002814
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002861
43879392 - 43953896
74505