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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43920062_43920736_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43920062 - 43920736
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGCACA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGGAGTTTAATC
Flanking Amino Acid:
ASSPECEAERGDRAEGAENK
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.8
39.9
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
88.7
0.87
0.7
83.8
24.3
Minor 5ss
38.6
-1.3
3
49.9
46.1
Minor BPS
50.3
-0
1.8
59.25
40.4

Associated Gene:

Gene:
SH3BP5
Ensembl Gene ID:
ENSAPLG00000002814
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002861
43879392 - 43953896
74505