About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4392242_4392773_R

Intron Information:

Intron Rank:
8
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
4392242 - 4392773
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
AT-AA
5'SS Sequence:
CCT|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TGCACCGTACAAA|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
GACTCCTTAACT
Flanking Amino Acid:
LVAEKLLKEPTVNIVQFEAN
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
30.4
-1.2
3.3
46.6
44.1
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
31.9
-1
3.1
38
38.8
Minor 5ss
94.7
1.49
0.9
90.9
28.7
Minor BPS
82.2
1.09
1.1
86.27
39.3

Associated Gene:

Gene:
GARS1
Ensembl Gene ID:
ENSAPLG00000015638
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016326
4384451 - 4403712
19262