About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43927010_43927088_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43927010 - 43927088
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
ACTTCTTTTATC
Flanking Amino Acid:
GFQKKSSGDYRCGFCYLEVE
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
80.7
0.69
0.7
76.9
30.3
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
61.7
0.35
1.6
68.09
38

Associated Gene:

Gene:
CAPN7
Ensembl Gene ID:
ENSAPLG00000001885
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035520
43925823 - 43952389
26567
ENSAPLT00000002011
43925823 - 43954249
28427