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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4392882_4395431_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4392882 - 4395431
Intron Length:
2550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAAAAAA
U12 Branch Point Sequence:
TGTTGGTGAAAG
Flanking Amino Acid:
CWDAESKTSYGWIEIVGCAD
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
73
37.8
Major BPS
46.5
-0.2
1
49.3
29.7
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
35.5
-1.7
3.3
48.1
41.3
Minor BPS
42.1
-0.7
2.5
54.38
46

Associated Gene:

Gene:
GARS1
Ensembl Gene ID:
ENSAPLG00000015638
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016326
4384451 - 4403712
19262