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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43937654_43937888_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43937654 - 43937888
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGAGT
5'SS Class:
major
3'SS Sequence:
TGTATTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTGTATTT
Flanking Amino Acid:
YAVLDIREYKGLRFLQLKNP
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
64.5
46.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.8
0.67
0.8
78
36.4
Minor 5ss
38.5
-1.3
3.4
58
46.3
Minor BPS
48.2
-0
2.2
71.82
40.2

Associated Gene:

Gene:
CAPN7
Ensembl Gene ID:
ENSAPLG00000001885
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002011
43925823 - 43954249
28427
ENSAPLT00000035520
43925823 - 43952389
26567