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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43938010_43939260_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43938010 - 43939260
Intron Length:
1251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTGAACA
Flanking Amino Acid:
KDSTFRMLYQRFHKGDVLIT
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
84.2
33.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.8
0.65
1
76.7
36.2
Minor 5ss
39.6
-1.2
3.3
59.2
45.4
Minor BPS
68.2
0.57
1.4
75.34
36.3

Associated Gene:

Gene:
CAPN7
Ensembl Gene ID:
ENSAPLG00000001885
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002011
43925823 - 43954249
28427
ENSAPLT00000035520
43925823 - 43952389
26567