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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43941123_43942675_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43941123 - 43942675
Intron Length:
1553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATTTTACAC
Flanking Amino Acid:
KLHINGVPRKVIIDDQLPVD
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
100
1.24
0.5
100
0
Major PPT
80.3
0.68
0.9
76.8
36.3
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
52.9
0.07
1.7
67.54
38.1

Associated Gene:

Gene:
CAPN7
Ensembl Gene ID:
ENSAPLG00000001885
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035520
43925823 - 43952389
26567
ENSAPLT00000002011
43925823 - 43954249
28427