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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43942770_43943784_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43942770 - 43943784
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
ERRYNKKLITSIIYPQNKKG
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.6
35.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
35.4
-1.7
2.8
45.8
42.3
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
CAPN7
Ensembl Gene ID:
ENSAPLG00000001885
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002011
43925823 - 43954249
28427
ENSAPLT00000035520
43925823 - 43952389
26567