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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43950678_43952169_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43950678 - 43952169
Intron Length:
1492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCATTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTCATTT
Flanking Amino Acid:
LERVQALHSAVQSQKTDPLK
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74
38.4
Major BPS
100
1.24
0.5
100
0
Major PPT
82.3
0.73
0.8
82
28.8
Minor 5ss
28.2
-2.5
2.8
32
42.7
Minor BPS
50.8
0.1
1.8
70.88
41.3

Associated Gene:

Gene:
CAPN7
Ensembl Gene ID:
ENSAPLG00000001885
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035520
43925823 - 43952389
26567
ENSAPLT00000002011
43925823 - 43954249
28427