About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43952279_43954147_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43952279 - 43954147
Intron Length:
1869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGGGGC
5'SS Class:
major
3'SS Sequence:
CTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTTGTTTCAAAT
Flanking Amino Acid:
RYQEAVFYYREAAQALIYAG
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
56.3
42.8
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
90.8
0.92
0.6
88.8
20.5
Minor 5ss
35.2
-1.7
3.5
40.6
46
Minor BPS
55.5
0.25
1.7
76.7
40.1

Associated Gene:

Gene:
CAPN7
Ensembl Gene ID:
ENSAPLG00000001885
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002011
43925823 - 43954249
28427