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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4397944_4398992_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4397944 - 4398992
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCAGTACC
5'SS Class:
major
3'SS Sequence:
CATCTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCCCAT
U12 Branch Point Sequence:
CCTGCCCCATCT
Flanking Amino Acid:
TSIGPGGNMPGYLRPETAQG
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
69.7
41.3
Major BPS
46.8
-0.2
1.4
54.3
42.9
Major PPT
80.9
0.7
0.8
77.3
31
Minor 5ss
32
-2.1
2.5
31
34.4
Minor BPS
42.8
-0.4
2.1
60.43
48.7

Associated Gene:

Gene:
GARS1
Ensembl Gene ID:
ENSAPLG00000015638
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016326
4384451 - 4403712
19262