Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43983804_43986292_F

Intron Information:

Intron Rank:

Intron Class:

major_hybrid

Intron Phase:

Intron Coordinates:

43983804 - 43986292

Intron Length:

2489

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCACTCCAC

5'SS Class:

major

3'SS Sequence:

CGTGAACACAGAG|G

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

TTTTTCTTACTA

Flanking Amino Acid:

RILLEAGSTKEADIYFLIDG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.2

54.9

46.3

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

43.7

-0.3

1.7

39.3

38.2

Minor 5ss

26.8

-2.7

4.1

41.6

45.1

Minor BPS

72.8

0.71

1.5

82.43

32.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029031

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037210

43983735 - 43989264

5530