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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43983818_43984560_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
43983818 - 43984560
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAGTGATC
5'SS Class:
weak_major
3'SS Sequence:
TAGTGTGTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTATTTTACTT
Flanking Amino Acid:
EAGSTKALHRLATIADIAFL
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1.2
54
43
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
71.6
0.49
1.1
61.8
48.3
Minor 5ss
38.4
-1.3
3.6
61
43.9
Minor BPS
61.4
0.44
1.6
79.53
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029031
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045664
43983735 - 43989264
5530