About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43985133_43986275_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43985133 - 43986275
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACATTTG
5'SS Class:
major
3'SS Sequence:
TCTTACTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTA
Flanking Amino Acid:
NKRLCNDIVKSCVNTEEADI
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
66
40.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
67.8
0.4
1
67.8
37.6
Minor 5ss
43.8
-0.7
3.1
57.1
42
Minor BPS
72.8
0.71
1.5
82.43
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029031
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045664
43983735 - 43989264
5530