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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43986465_43986528_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
43986465 - 43986528
Intron Length:
64

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCCAGCACA
5'SS Class:
major
3'SS Sequence:
AAATAGGGGGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATATTGAACA
Flanking Amino Acid:
ASAPKKEFVIGTRTGDALIY
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.2
65.4
39.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
38.5
-0.6
1.7
28
41.3
Minor 5ss
24.9
-2.9
3.6
29.8
36.4
Minor BPS
57.5
0.23
1.6
67.81
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029031
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037210
43983735 - 43989264
5530