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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43987963_43988913_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
43987963 - 43988913
Intron Length:
951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAAACCA
5'SS Class:
major
3'SS Sequence:
TCTGCCAGGCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
AAATATTCAACT
Flanking Amino Acid:
VTDGESHDSVPFTARALNFA
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.1
54.1
36.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
48.7
-0
1.2
45.6
40.5
Minor 5ss
33.5
-1.9
3.2
41.9
39.6
Minor BPS
54
0.2
1.7
70.28
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029031
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037210
43983735 - 43989264
5530