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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4400884_4402352_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4400884 - 4402352
Intron Length:
1469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTTT
5'SS Class:
major
3'SS Sequence:
TTCTTGCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
GCTATATAAACT
Flanking Amino Acid:
ECFRADHLLKAHLQKLMSDK
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1.2
79.9
36
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
81.3
0.7
0.8
75.8
32.9
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
47.8
-0
1.9
66.11
44.2

Associated Gene:

Gene:
GARS1
Ensembl Gene ID:
ENSAPLG00000015638
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016326
4384451 - 4403712
19262