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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_44047597_44048960_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44047597 - 44048960
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCCCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTGGCATTATCT
Flanking Amino Acid:
ASCLSVLGNCSCSRQQ*
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
76.3
0.59
0.8
70.9
29.6
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
55
0.23
2
76.93
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016473
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039200
44047460 - 44049157
1698